Week 2 (5-15 to 5-20)

The Utility of N,N-Biotinyl Glutathione Disulfide in the Study of Protein S-Glutathiolation
-Has data but did not publish
-Is FITC a labelling technique?

Identification of the Major Site of O-Linked ß-N-Acetylglucosamine Modification in the C Terminus of Insulin Receptor Substrate-1
-Has data but did not publish
- What does "spiked with the synthetic O-GlcNAc-modified peptide" mean?
- How do I write "differential modification of Ser and Thr residues (136.2 Da) and static modifications accounting for oxidation at Cys (48 Da), Met (32 Da), and Trp (16, 32, or
48 Da) and Ser/Thr (80 Da), and differential O-GlcNAc modification of Ser/Thr (203.2 Da). SEQUEST results were filtered by Xcorr scores of 1.0, 2.0, and 2.5 for 1, 2, and 3
charge state peptides)?

I have not been able to access the ProteomeCommons website so I wrote out all fields on paper and will transfer at a later date.

Elucidation of N-Glycosylation Sites on Human Platelet Proteins
-Has data but did not publish

Identification of VCP/p97, Carboxyl Terminus of Hsp70-interacting Protein (CHIP),
-Has data but did not publish

A Novel Subtractive Antibody Phage Display Method to Discover Disease Markers*
-Has data but did not publish
- What should I put for "Serum" since there is no eVOC #?
- Does not say anything about mass spec except "subjected to MALDI-TOF mass spectrometric analysis"

Proteomic Studies of the Singapore Grouper Iridovirus*□
--Has data but did not publish
-How do I write "pyroglutamation" as a var mod?

A Novel Two-dimensional Electrophoresis Technique for the Identification of Intrinsically
Unstructured Proteins
--Has data but did not publish
-Does not list the mass spec (only that it was MALDI)

Low Temperature Treatment at the Young Microspore Stage Induces Protein Changes in Rice Anthers
-Has data but did not publish

New Data Analysis and Mining Approaches Identify Unique Proteome and Transcriptome Markers of Susceptibility to Autoimmune Diabetes
-Has data but did not publish
-Used "Non-obese diabetic" mice but Ontology had diabetes mellitus or insipitus
- Didn't use any Mass Specs

Organellar Proteomics
-Has data but did not publish
-"2D Gel Electrophoresis, In-gel Protein Digestion, iTRAQ Labeling,
2D LC-MALDI, Tandem Mass Spectrometry, and Data Analysis—
These are described in detail in the Supplemental Experimental
Procedures."- Where do I get that?


Differential Modification of Phosducin Protein in Degenerating rd1 Retina Is Associated with
Constitutively Active Ca2
/Calmodulin Kinase II in Rod Outer Segments*
-Has data but did not publish
-When you copy and paste from Adobe, things like accents don't paste correctly (they move from above the letter and become a new character themselves)

Automated Identification and Quantification of Protein Phosphorylation Sites by LC/MS
-Has data but did not publish

Proteins Exposed at the Adult Schistosome Surface Revealed by Biotinylation
- -Has data but did not publish
- How do I write the variable mod "modification of lysine and N-terminal residues
by the biotinylation reagents."?

The Turnover Kinetics of Major Histocompatibility Complex Peptides of Human Cancer Cells
-Has data but did not publish

An Integrated Mass Spectrometry-based Proteomic Approach: Quantitative Analysis of Tandem Affinity-
-Has data but did not publish
- Is "QSTAR XL" ESI?